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Motif IL_85033.1 Version IL_85033.1 of this group appears in releases 3.95 to 3.95

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_1KUQ_0031KUQ0.60211Tandem non-canonical cWW pairsB16S RIBOSOMAL RNA FRAGMENTG26A27||AG28||AG30*U39G40G41U42cWWncWWcwWcWW
2 IL_6CZR_1416CZR0.42091Tandem non-canonical cWW pairs1a SSU rRNAG646A647G648G650*U724G725G726U727cWWncWWcwWcWW
3 IL_4LFB_0294LFB0.42951Tandem non-canonical cWW pairsA SSU rRNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
4 IL_1G1X_0031G1X0.44711Tandem non-canonical cWW pairsD+E16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
5 IL_1G1X_0061G1X0.44231Tandem non-canonical cWW pairsI+J16S RIBOSOMAL RNAG662A663G664G666*U740G741G742U743cWWcWWcwWcWW
6 IL_5J7L_0335J7L0.42601Tandem non-canonical cWW pairsAA SSU rRNAU662A663G664G666*U740G741G742A743cWWcWWcwWcWW
7 IL_1GID_0081GID0.53701BP4-P6 RNA RIBOZYME DOMAING103A104A105U107*A214G215C216C217cWWcWWcWWcWW
8 IL_8CRE_0188CRE0.48830Tandem non-canonical cWW pairs (H)1 LSU rRNAG481U482U483U484*A445U446U447U448cWWncwWcWW
9 IL_6JDV_0026JDV0.35270Tandem non-canonical cWW pairsBsgRNAA63C64C65G66*C35C36U37U38cWWcWWcWW
10 IL_1MFQ_0041MFQ0.35070Tandem non-canonical cWW pairsA SRP RNAG156A157C158C159*G138A139C140C141cWWncWWncWWcWW
11 IL_1D4R_0031D4R0.36640Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWcWWcWW
12 IL_1JID_0021JID0.34610Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
13 IL_1D4R_0011D4R0.31890Tandem non-canonical cWW pairsB+A29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWacWWcWW
14 IL_3WBM_0023WBM0.36340Tandem non-canonical cWW pairsX+YRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBncWWcWW
15 IL_3WBM_0033WBM0.33320Tandem non-canonical cWW pairsY+XRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBcWWcWW
16 IL_7VYX_0027VYX0.45080CsgRNAG50G51U52G53*C13U14U15C16cWWncWWancwWncWW
17 IL_5EW4_0025EW40.40490Tandem non-canonical cWW pairsA+BRNA (22-mer)C14C15C16G17*C8C9C10G11cWWncWBncWBcWW
18 IL_8FER_0018FER0.48600AAA+BBBRNA 16mer with two continuous s(2)UG7SUR8SUR9C10*G7SUR8SUR9C10cWWcWwcWwcWW
19 IL_1L9A_0051L9A0.27800Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG156A157C158C159*G138A139C140C141cWWncWWancWWcWW
20 IL_4K27_0014K270.26660Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC4C5U6G7*C49C50U51G52cWWcWWcWWcWW
21 IL_8CRE_4358CRE0.22890Tandem non-canonical cWW pairs (H)CM SSU rRNAG870U871A872U873*A909G910A911C912cWWcWWcWW
22 IL_8P9A_4218P9A0.22970Tandem non-canonical cWW pairs (H)sR SSU rRNAG885U886A887U888*A924G925A926C927cWWcWWcWW
23 IL_8CRE_4338CRE0.20980Tandem non-canonical cWW pairs (H)CM SSU rRNAG856G857U858C859*G938G939A940C941cWWcWWcWW
24 IL_8P9A_4198P9A0.19560Tandem non-canonical cWW pairs (H)sR SSU rRNAG871G872U873C874*G953G954A955C956cWWcWWcWW
25 IL_3CJZ_0013CJZ0.19480Tandem non-canonical cWW pairsA+BRNA (13-mer)G5M2G6A7C8*G18M2G19A20C21cWWcWWcWWcWW
26 IL_5LQO_0025LQO0.16060Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G5A6C7*G4G5A6C7cWWcWWcWWcWW
27 IL_5LQT_0025LQT0.00000Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G56MZ6C7*G4G56MZ6C7cWWcWWcWWcWW
28 IL_333D_001333D0.14620Tandem non-canonical cWW pairsARNA (8-mer)C3A4I5G6*C3||||11_655A4||||11_655I5||||11_655G6||||11_655cWWcWWcWWcWW
29 IL_8CRE_4408CRE0.29420Tandem non-canonical cWW pairs (H)CM SSU rRNAG1059C1060A1061C1062*G1026G1027A1028U1029cWWncBWcWWcWW
30 IL_8P9A_4268P9A0.30870Tandem non-canonical cWW pairs (H)sR SSU rRNAG1074C1075A1076C1077*G1041G1042A1043U1044cWWncBWcWWcWW
31 IL_5J7L_2835J7L0.23260Tandem non-canonical cWW pairsDA LSU rRNAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
32 IL_8CRE_1098CRE0.28750Tandem non-canonical cWW pairs (H)1 LSU rRNAU2707A2708C2709A2710*U2690U2691G2692A2693cWWcWWcWW
33 IL_8P9A_3278P9A0.25050Tandem non-canonical cWW pairs (H)AR LSU rRNAU2735A2736C2737A2738*U2718U2719G2720A2721cWWcWWcWW
34 IL_7R9G_0027R9G0.26180Tandem non-canonical cWW pairsBRNA (18-mer)C5G6G7G8*C5||||2_555G6||||2_555G7||||2_555G8||||2_555ncWWncWW
35 IL_8CRE_4348CRE0.39841Tandem non-canonical cWW pairs (H)CM SSU rRNAC935A936A937G938*C859G860G862G863cWWcWWcWWcWW
36 IL_8P9A_4208P9A0.41611Tandem non-canonical cWW pairs (H)sR SSU rRNAC950A951A952G953*C874G875G877G878cWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGAG*UGGU5
GACC*GACC5
ACCC*GACU2
GUAU*AGAC2
GGUC*GGAC2
GCAC*GGAU2
UACA*UUGA2
CAAG*CGGGG2
UAGAG*UGGA1
GAAUU*AGCC1
GUUU*AUUU1
ACCG*CCUU1
GGUG*CUUC1
CCCG*CCCG1
G(SUR)(SUR)C*G(SUR)(SUR)C1
CCUG*CCUG1
GAC*GAC1
GGAC*GGAC1
GGC*GGC1
CA(I)G*CA(I)G1
GAAG*CGGC1
CGGG*CGGG1
Non-Watson-Crick part of the motif
SequenceCounts
AGA*GG6
AC*AC5
CC*AC2
UA*GA2
GU*GA2
CA*GA2
AC*UG2
AA*GGG2
AAU*GC1
UU*UU1
CC*CU1
GU*UU1
CC*CC1
(SUR)(SUR)*(SUR)(SUR)1
CU*CU1
(M2G)A*(M2G)A1
GA*GA1
G(6MZ)*G(6MZ)1
A(I)*A(I)1
AA*GG1
GG*GG1

Release history

Release3.95
Date2025-03-26
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (22)
  • Tandem non-canonical cWW pairs (H) (11)
  • (3)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.39 | Max 0.78
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