IL_6CZR_142

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGAAUU*AGGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6CZR|1|1a|G|657
6CZR|1|1a|G|658
6CZR|1|1a|A|659
6CZR|1|1a|A|660
6CZR|1|1a|U|661
6CZR|1|1a|U|662
*
6CZR|1|1a|A|696
6CZR|1|1a|G|697
6CZR|1|1a|G|698
6CZR|1|1a|A|699
6CZR|1|1a|A|700
6CZR|1|1a|C|701

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1f

30S ribosomal protein S6

Chain 1k

30S ribosomal protein S11

Chain 1r

30S ribosomal protein S18