IL_6CZR_161

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

6CZR|1|1a|U|1239, 6CZR|1|1a|U|1260, 6CZR|1|1a|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6CZR|1|1a|G|1237
6CZR|1|1a|A|1238
6CZR|1|1a|U|1239
6CZR|1|1a|G|1240
*
6CZR|1|1a|C|1259
6CZR|1|1a|U|1260
6CZR|1|1a|A|1261
6CZR|1|1a|A|1262
6CZR|1|1a|U|1263
6CZR|1|1a|C|1264

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14 type Z