IL_6CZR_163

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_163 not in the Motif Atlas

Geometric match to IL_4LFB_054

Geometric discrepancy: 0.2339

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6CZR|1|1a|C|1242
6CZR|1|1a|A|1243
6CZR|1|1a|C|1244
*
6CZR|1|1a|G|1255
6CZR|1|1a|G|1256

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1u

30S ribosomal protein Thx