IL_6CZR_185

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6CZR|1|2A|U|528, 6CZR|1|2A|G|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_185 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.1285

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6CZR|1|2A|G|506
6CZR|1|2A|A|507
6CZR|1|2A|A|508
6CZR|1|2A|C|509
*
6CZR|1|2A|G|520
6CZR|1|2A|A|521
6CZR|1|2A|G|522
6CZR|1|2A|U|523
6CZR|1|2A|G|524
6CZR|1|2A|A|525
6CZR|1|2A|A|526
6CZR|1|2A|A|527
6CZR|1|2A|U|528
6CZR|1|2A|A|529
6CZR|1|2A|G|530
6CZR|1|2A|A|531
6CZR|1|2A|G|532
6CZR|1|2A|C|533

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24