3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
UAG*CA
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CZR_201 not in the Motif Atlas
Geometric match to IL_7RQB_032
Geometric discrepancy: 0.2477
The information below is about IL_7RQB_032
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_80097.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
17

Unit IDs

6CZR|1|2A|U|923
6CZR|1|2A|A|924
6CZR|1|2A|G|925
*
6CZR|1|2A|C|943
6CZR|1|2A|A|944

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2Q
50S ribosomal protein L16
Chain 2Z
50S ribosomal protein L25

Coloring options:


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