IL_6CZR_209
3D structure
- PDB id
- 6CZR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of amicetin bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.14 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 6CZR|1|2A|U|1071, 6CZR|1|2A|A|1172, 6CZR|1|2A|U|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CZR_209 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0982
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6CZR|1|2A|G|1069
6CZR|1|2A|G|1070
6CZR|1|2A|U|1071
6CZR|1|2A|A|1072
6CZR|1|2A|A|1073
6CZR|1|2A|A|1074
6CZR|1|2A|G|1075
*
6CZR|1|2A|C|1169
6CZR|1|2A|G|1170
6CZR|1|2A|A|1171
6CZR|1|2A|A|1172
6CZR|1|2A|A|1173
6CZR|1|2A|A|1174
6CZR|1|2A|U|1175
6CZR|1|2A|G|1176
6CZR|1|2A|A|1177
6CZR|1|2A|U|1178
6CZR|1|2A|C|1179
6CZR|1|2A|G|1180
6CZR|1|2A|G|1181
6CZR|1|2A|G|1182
6CZR|1|2A|G|1183
6CZR|1|2A|C|1184
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L36
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2E
- 50S ribosomal protein L3
- Chain 2N
- 50S ribosomal protein L13
- Chain 2Q
- 50S ribosomal protein L16
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