IL_6CZR_211

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6CZR|1|2A|A|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_211 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3764

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6CZR|1|2A|C|1088
6CZR|1|2A|G|1089
6CZR|1|2A|A|1090
6CZR|1|2A|A|1091
6CZR|1|2A|G|1092
6CZR|1|2A|A|1093
6CZR|1|2A|C|1094
6CZR|1|2A|A|1095
6CZR|1|2A|G|1096
*
6CZR|1|2A|U|1153
6CZR|1|2A|C|1154
6CZR|1|2A|G|1155
6CZR|1|2A|A|1156
6CZR|1|2A|G|1157

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6