IL_6CZR_219

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

6CZR|1|2A|G|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_219 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1279

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6CZR|1|2A|G|1364
6CZR|1|2A|C|1365
6CZR|1|2A|A|1366
6CZR|1|2A|A|1367
6CZR|1|2A|U|1368
*
6CZR|1|2A|A|1376
6CZR|1|2A|G|1377
6CZR|1|2A|C|1378

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23