IL_6CZR_221

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_221 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1514

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6CZR|1|2A|U|1402
6CZR|1|2A|G|1403
6CZR|1|2A|A|1404
6CZR|1|2A|A|1405
6CZR|1|2A|G|1406
*
6CZR|1|2A|C|1415
6CZR|1|2A|G|1416
6CZR|1|2A|U|1417
6CZR|1|2A|A|1418
6CZR|1|2A|G|1419

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2