IL_6CZR_223

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_223 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.1818

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6CZR|1|2A|C|1462
6CZR|1|2A|G|1463
6CZR|1|2A|A|1464
6CZR|1|2A|U|1465
6CZR|1|2A|G|1466
*
6CZR|1|2A|C|1623
6CZR|1|2A|U|1624
6CZR|1|2A|A|1625
6CZR|1|2A|A|1626
6CZR|1|2A|G|1627

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains