IL_6CZR_231

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6CZR|1|2A|C|1589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_231 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.1095

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6CZR|1|2A|G|1571
6CZR|1|2A|G|1572
6CZR|1|2A|A|1573
6CZR|1|2A|A|1574
6CZR|1|2A|G|1575
*
6CZR|1|2A|U|1586
6CZR|1|2A|G|1587
6CZR|1|2A|A|1588
6CZR|1|2A|C|1589
6CZR|1|2A|A|1590
6CZR|1|2A|A|1591
6CZR|1|2A|C|1592

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains