IL_6CZR_240

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

6CZR|1|2A|A|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_240 not in the Motif Atlas

Homologous match to IL_7RQB_072

Geometric discrepancy: 0.1608

The information below is about IL_7RQB_072

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_16396.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6CZR|1|2A|U|1871
6CZR|1|2A|G|1872
*
6CZR|1|2A|U|1919
6CZR|1|2A|G|1920
6CZR|1|2A|A|1921
6CZR|1|2A|A|1922

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA