IL_6CZR_270

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6CZR|1|2A|G|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_270 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1294

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6CZR|1|2A|U|2647
6CZR|1|2A|U|2648
6CZR|1|2A|G|2649
6CZR|1|2A|A|2650
6CZR|1|2A|G|2651
*
6CZR|1|2A|C|2786
6CZR|1|2A|A|2787
6CZR|1|2A|A|2788
6CZR|1|2A|G|2789
6CZR|1|2A|A|2790
6CZR|1|2A|U|2791
6CZR|1|2A|G|2792
6CZR|1|2A|A|2793
6CZR|1|2A|G|2794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13