IL_6CZR_292

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6CZR|1|2a|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_292 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1672

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6CZR|1|2a|G|143
6CZR|1|2a|A|144
6CZR|1|2a|C|145
6CZR|1|2a|A|146
6CZR|1|2a|A|147
6CZR|1|2a|C|148
*
6CZR|1|2a|G|163
6CZR|1|2a|C|164
6CZR|1|2a|U|165
6CZR|1|2a|A|166
6CZR|1|2a|A|167
6CZR|1|2a|U|168
6CZR|1|2a|C|169

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20