IL_6CZR_325

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_325 not in the Motif Atlas

Homologous match to IL_4LFB_047

Geometric discrepancy: 0.1378

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6CZR|1|2a|G|1044
6CZR|1|2a|U|1045
6CZR|1|2a|C|1046
*
6CZR|1|2a|G|1175
6CZR|1|2a|U|1176
6CZR|1|2a|C|1177

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2e

30S ribosomal protein S5

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z