IL_6CZR_340

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_340 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.322

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6CZR|1|1A|G|289
6CZR|1|1A|G|290
6CZR|1|1A|G|291
*
6CZR|1|1A|U|391
6CZR|1|1A|A|392
6CZR|1|1A|C|393
6CZR|1|1A|C|394

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1I

50S ribosomal protein L9