IL_6CZR_350

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CAGAAG*UGGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_350 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.333

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6CZR|1|1A|C|1514
6CZR|1|1A|A|1515
6CZR|1|1A|G|1516
6CZR|1|1A|A|1517
6CZR|1|1A|A|1518
6CZR|1|1A|G|1519
*
6CZR|1|1A|U|1565
6CZR|1|1A|G|1566
6CZR|1|1A|G|1567
6CZR|1|1A|U|1568
6CZR|1|1A|G|1569

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains