IL_6CZR_388

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUGAC*GGC

Length

8 nucleotides

Bulged bases

6CZR|1|2a|G|124, 6CZR|1|2a|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_388 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.3881

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6CZR|1|2a|G|122
6CZR|1|2a|U|123
6CZR|1|2a|G|124
6CZR|1|2a|A|125
6CZR|1|2a|C|126
*
6CZR|1|2a|G|227
6CZR|1|2a|G|228
6CZR|1|2a|C|229

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17

Chain 2t

30S ribosomal protein S20