IL_6CZR_392

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GCAAAC*GGUAGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_392 not in the Motif Atlas

Geometric match to IL_1MFQ_007

Geometric discrepancy: 0.3815

The information below is about IL_1MFQ_007

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6CZR|1|2a|G|762
6CZR|1|2a|C|763
6CZR|1|2a|A|764
6CZR|1|2a|A|765
6CZR|1|2a|A|766
6CZR|1|2a|C|767
*
6CZR|1|2a|G|783
6CZR|1|2a|G|784
6CZR|1|2a|U|785
6CZR|1|2a|A|786
6CZR|1|2a|G|787
6CZR|1|2a|U|788

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11