IL_6D8L_004

3D structure

PDB id

6D8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CAACAGC*GACAUG

Length

13 nucleotides

Bulged bases

6D8L|1|A|A|125, 6D8L|1|A|U|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8L_004 not in the Motif Atlas

Geometric match to IL_2R8S_003

Geometric discrepancy: 0.1372

The information below is about IL_2R8S_003

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_68405.1

Basepair signature

cWW-cSS-L-tWH-tHW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6D8L|1|A|C|121
6D8L|1|A|A|122
6D8L|1|A|A|123
6D8L|1|A|C|124
6D8L|1|A|A|125
6D8L|1|A|G|126
6D8L|1|A|C|127
*
6D8L|1|A|G|195
6D8L|1|A|A|196
6D8L|1|A|C|197
6D8L|1|A|A|198
6D8L|1|A|U|199
6D8L|1|A|G|200

Current chains

Chain A

Group I self-splicing intron

Nearby chains