IL_6D8L_005

3D structure

PDB id

6D8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUAC*GAC

Length

7 nucleotides

Bulged bases

6D8L|1|A|A|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8L_005 not in the Motif Atlas

Geometric match to IL_4V8Q_188

Geometric discrepancy: 0.2731

The information below is about IL_4V8Q_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6D8L|1|A|G|129
6D8L|1|A|U|130
6D8L|1|A|A|131
6D8L|1|A|C|132
*
6D8L|1|A|G|191
6D8L|1|A|A|192
6D8L|1|A|C|193

Current chains

Chain A

Group I self-splicing intron

Nearby chains

Chain B

Group I self-splicing intron