IL_6D8L_013

3D structure

PDB id

6D8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUA*UAAUAAGC

Length

11 nucleotides

Bulged bases

6D8L|1|B|A|184, 6D8L|1|B|U|185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8L_013 not in the Motif Atlas

Geometric match to IL_2R8S_005

Geometric discrepancy: 0.1617

The information below is about IL_2R8S_005

Detailed Annotation

cWH basepair with bulged bases

Broad Annotation

cWH basepair with bulged bases

Motif group

IL_74957.1

Basepair signature

cWW-L-cHW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6D8L|1|B|G|134
6D8L|1|B|U|135
6D8L|1|B|A|136
*
6D8L|1|B|U|182
6D8L|1|B|A|183
6D8L|1|B|A|184
6D8L|1|B|U|185
6D8L|1|B|A|186
6D8L|1|B|A|187
6D8L|1|B|G|188
6D8L|1|B|C|189

Current chains

Chain B

Group I self-splicing intron

Nearby chains