IL_6D8O_018

3D structure

PDB id

6D8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A230U

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AG*UAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8O_018 not in the Motif Atlas

Geometric match to IL_1U6B_010

Geometric discrepancy: 0.1208

The information below is about IL_1U6B_010

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_43434.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

6D8O|1|A|A|226
6D8O|1|A|G|227
*
6D8O|1|A|U|247
6D8O|1|A|A|248
6D8O|1|A|U|249

Current chains

Chain A

Group I self-splicing intron

Nearby chains

Chain B

Group I self-splicing intron