IL_6D90_010

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGUUCCUUU*AUUCGAA

Length

17 nucleotides

Bulged bases

6D90|1|2|G|113, 6D90|1|2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|U|112
6D90|1|2|G|113
6D90|1|2|G|114
6D90|1|2|U|115
6D90|1|2|U|116
6D90|1|2|C|117
6D90|1|2|C|118
6D90|1|2|U|119
6D90|1|2|U|120
6D90|1|2|U|121
*
6D90|1|2|A|343
6D90|1|2|U|344
6D90|1|2|U|345
6D90|1|2|C|346
6D90|1|2|G|347
6D90|1|2|A|348
6D90|1|2|A|349

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain JJ

eS8

Chain MM

uS17