IL_6D90_017

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

6D90|1|2|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_017 not in the Motif Atlas

Geometric match to IL_4P3U_001

Geometric discrepancy: 0.3038

The information below is about IL_4P3U_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6D90|1|2|G|312
6D90|1|2|A|313
6D90|1|2|U|314
6D90|1|2|C|315
*
6D90|1|2|G|335
6D90|1|2|A|336
6D90|1|2|C|337

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain HH

eS6