IL_6D90_027

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACU*AGGCCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|G|534
6D90|1|2|G|535
6D90|1|2|A|536
6D90|1|2|C|537
6D90|1|2|U|538
*
6D90|1|2|A|545
6D90|1|2|G|546
6D90|1|2|G|547
6D90|1|2|C|548
6D90|1|2|C|549
6D90|1|2|C|550

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ff

eS30