IL_6D90_028

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

6D90|1|2|G|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_028 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.2566

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6D90|1|2|G|563
6D90|1|2|A|564
6D90|1|2|G|565
*
6D90|1|2|C|585
6D90|1|2|G|586
6D90|1|2|A|587
6D90|1|2|G|588
6D90|1|2|G|589
6D90|1|2|A|590
6D90|1|2|U|591
6D90|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain ff

eS30