IL_6D90_073

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACU*AUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_073 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2212

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6D90|1|2|G|1536
6D90|1|2|A|1537
6D90|1|2|C|1538
6D90|1|2|U|1539
*
6D90|1|2|A|1594
6D90|1|2|U|1595
6D90|1|2|U|1596
6D90|1|2|C|1597

Current chains

Chain 2

18S rRNA

Nearby chains

Chain GG

uS7

Chain RR

uS9

Chain TT

uS13

Chain UU

eS19

Chain aa

eS25