IL_6D90_087

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAUC*GAGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_087 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3146

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6D90|1|2|C|1742
6D90|1|2|G|1743
6D90|1|2|G|1744
6D90|1|2|A|1745
6D90|1|2|U|1746
6D90|1|2|C|1747
*
6D90|1|2|G|1787
6D90|1|2|A|1788
6D90|1|2|G|1789
6D90|1|2|A|1790
6D90|1|2|A|1791
6D90|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain HH

eS6

Chain JJ

eS8

Chain W

eL24