IL_6D90_096

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_096 not in the Motif Atlas

Geometric match to IL_5ED2_004

Geometric discrepancy: 0.1531

The information below is about IL_5ED2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6D90|1|5|G|16
6D90|1|5|A|17
6D90|1|5|C|18
*
6D90|1|8|G|139
6D90|1|8|C|140
6D90|1|8|C|141

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain N

eL15

Chain X

eL23

Chain h

eL35