IL_6D90_112

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

6D90|1|5|C|449

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_112 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2466

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6D90|1|5|G|448
6D90|1|5|C|449
6D90|1|5|G|450
6D90|1|5|C|451
*
6D90|1|5|G|1296
6D90|1|5|U|1297
6D90|1|5|C|1298

Current chains

Chain 5

28S rRNA

Nearby chains

Chain e

eL32

Chain f

eL33