IL_6D90_115

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCAACC*GGCGCAUUU

Length

17 nucleotides

Bulged bases

6D90|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|A|466
6D90|1|5|U|467
6D90|1|5|U|468
6D90|1|5|C|469
6D90|1|5|A|470
6D90|1|5|A|471
6D90|1|5|C|472
6D90|1|5|C|473
*
6D90|1|5|G|681
6D90|1|5|G|682
6D90|1|5|C|683
6D90|1|5|G|684
6D90|1|5|C|685
6D90|1|5|A|686
6D90|1|5|U|687
6D90|1|5|U|688
6D90|1|5|U|689

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain r

eL28