IL_6D90_119

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

6D90|1|5|C|498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_119 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.3222

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6D90|1|5|G|497
6D90|1|5|C|498
6D90|1|5|G|499
*
6D90|1|5|C|656
6D90|1|5|C|657

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4