IL_6D90_124

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

6D90|1|5|A|932, 6D90|1|5|G|933, 6D90|1|5|C|934, 6D90|1|5|A|935, 6D90|1|5|G|935|||A, 6D90|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|A|732
6D90|1|5|A|733
6D90|1|5|G|734
6D90|1|5|G|735
*
6D90|1|5|C|928
6D90|1|5|A|929
6D90|1|5|G|930
6D90|1|5|C|931
6D90|1|5|A|932
6D90|1|5|G|933
6D90|1|5|C|934
6D90|1|5|A|935
6D90|1|5|G|935|||A
6D90|1|5|C|936
6D90|1|5|U|937

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain M

eL14

Chain S

eL20