IL_6D90_128

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCU*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_128 not in the Motif Atlas

Geometric match to IL_5TBW_103

Geometric discrepancy: 0.2542

The information below is about IL_5TBW_103

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6D90|1|5|U|980
6D90|1|5|C|981
6D90|1|5|U|982
*
6D90|1|5|G|1273
6D90|1|5|A|1274
6D90|1|5|G|1275

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain F

uL30

Chain b

eL29