IL_6D90_140

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCC*GGAG

Length

7 nucleotides

Bulged bases

6D90|1|5|A|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_140 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.2855

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_23751.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6D90|1|5|C|1467
6D90|1|5|C|1468
6D90|1|5|C|1469
*
6D90|1|5|G|1495
6D90|1|5|G|1496
6D90|1|5|A|1497
6D90|1|5|G|1498

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

rL18

Chain a

uL15