IL_6D90_169

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6D90|1|5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_169 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2565

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

6D90|1|5|G|2001
6D90|1|5|A|2002
6D90|1|5|G|2003
6D90|1|5|U|2004
6D90|1|5|G|2005
*
6D90|1|5|C|2014
6D90|1|5|U|2015
6D90|1|5|C|2016

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

uL10

Chain t

uL11