IL_6D90_196
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGAAGG*UGUUGACGC
- Length
- 16 nucleotides
- Bulged bases
- 6D90|1|5|A|3663, 6D90|1|5|U|3679, 6D90|1|5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D90|1|5|G|3659
6D90|1|5|C|3660
6D90|1|5|G|3661
6D90|1|5|A|3662
6D90|1|5|A|3663
6D90|1|5|G|3664
6D90|1|5|G|3665
*
6D90|1|5|U|3677
6D90|1|5|G|3678
6D90|1|5|U|3679
6D90|1|5|U|3680
6D90|1|5|G|3681
6D90|1|5|A|3682
6D90|1|5|C|3683
6D90|1|5|G|3684
6D90|1|5|C|3685
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain p
- eL43
Coloring options: