IL_6D90_203

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_203 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.2894

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6D90|1|5|G|3780
6D90|1|5|C|3781
*
6D90|1|5|G|3811
6D90|1|5|C|3812
6D90|1|5|A|3813
6D90|1|5|U|3814

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain jj

eRF1

Chain n

eL41