3D structure

PDB id
6D90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAGU*GUGGG
Length
9 nucleotides
Bulged bases
6D90|1|5|G|4183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D90_209 not in the Motif Atlas
Geometric match to IL_3NPQ_006
Geometric discrepancy: 0.3188
The information below is about IL_3NPQ_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93503.1
Basepair signature
cWW-cWW-L-R-L-cWW-L
Number of instances in this motif group
4

Unit IDs

6D90|1|5|U|3927
6D90|1|5|A|3928
6D90|1|5|G|3929
6D90|1|5|U|3930
*
6D90|1|5|G|4180
6D90|1|5|U|4181
6D90|1|5|G|4182
6D90|1|5|G|4183
6D90|1|5|G|4184

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
uL2
Chain N
eL15
Chain o
eL42

Coloring options:


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