IL_6D90_225
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D90_225 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.1468
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6D90|1|5|C|4412
6D90|1|5|C|4413
6D90|1|5|A|4414
6D90|1|5|A|4415
6D90|1|5|G|4416
*
6D90|1|5|C|4426
6D90|1|5|G|4427
6D90|1|5|A|4428
6D90|1|5|C|4429
6D90|1|5|G|4430
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- uL16
- Chain jj
- eRF1
- Chain m
- eL40
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