IL_6D90_230

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGU*ACAG

Length

7 nucleotides

Bulged bases

6D90|1|5|A|4548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_230 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.3329

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6D90|1|5|C|4537
6D90|1|5|G|4538
6D90|1|5|U|4539
*
6D90|1|5|A|4546
6D90|1|5|C|4547
6D90|1|5|A|4548
6D90|1|5|G|4549

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

uL2

Chain jj

eRF1