IL_6D90_232

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6D90|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_232 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3248

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6D90|1|5|C|4582
6D90|1|5|C|4583
6D90|1|5|A|4584
6D90|1|5|U|4585
*
6D90|1|5|A|4717
6D90|1|5|G|4718
6D90|1|5|G|4719
6D90|1|5|C|4720
6D90|1|5|G|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13