IL_6D90_242

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

6D90|1|5|C|4757, 6D90|1|5|U|4758, 6D90|1|5|A|4764, 6D90|1|5|G|4870, 6D90|1|5|C|4871, 6D90|1|5|G|4873, 6D90|1|5|A|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|C|4756
6D90|1|5|C|4757
6D90|1|5|U|4758
6D90|1|5|C|4759
6D90|1|5|G|4760
6D90|1|5|G|4761
6D90|1|5|A|4762
6D90|1|5|U|4763
6D90|1|5|A|4764
6D90|1|5|G|4765
6D90|1|5|C|4766
*
6D90|1|5|G|4868
6D90|1|5|U|4869
6D90|1|5|G|4870
6D90|1|5|C|4871
6D90|1|5|G|4872
6D90|1|5|G|4873
6D90|1|5|A|4874
6D90|1|5|G|4875
6D90|1|5|A|4876
6D90|1|5|G|4877

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain H

uL6

Chain M

eL14

Chain O

uL13

Chain S

eL20