IL_6D90_266

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAUU*ACCUCGGGC

Length

14 nucleotides

Bulged bases

6D90|1|2|U|305, 6D90|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|G|215
6D90|1|2|C|216
6D90|1|2|A|217
6D90|1|2|U|218
6D90|1|2|U|219
*
6D90|1|2|A|302
6D90|1|2|C|303
6D90|1|2|C|304
6D90|1|2|U|305
6D90|1|2|C|306
6D90|1|2|G|307
6D90|1|2|G|308
6D90|1|2|G|309
6D90|1|2|C|310

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain JJ

eS8