IL_6D90_272

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGG*UCAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_272 not in the Motif Atlas

Geometric match to IL_7SZU_003

Geometric discrepancy: 0.3439

The information below is about IL_7SZU_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6D90|1|2|A|922
6D90|1|2|G|923
6D90|1|2|G|924
*
6D90|1|2|U|1018
6D90|1|2|C|1019
6D90|1|2|A|1020
6D90|1|2|U|1021
6D90|1|2|U|1022

Current chains

Chain 2

18S rRNA

Nearby chains

Chain OO

uS15

Chain XX

uS8

Chain cc

eS27