IL_6D90_278

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6D90|1|2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_278 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3185

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6D90|1|2|G|1203
6D90|1|2|A|1204
6D90|1|2|C|1205
*
6D90|1|2|G|1693
6D90|1|2|U|1694
6D90|1|2|A|1695
6D90|1|2|C|1696

Current chains

Chain 2

18S rRNA

Nearby chains

Chain DD

uS5

Chain bb

eS26