IL_6D90_280

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGACAGGAUUG*CUCGAUUCCG

Length

22 nucleotides

Bulged bases

6D90|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D90_280 not in the Motif Atlas

Homologous match to IL_8P9A_435

Geometric discrepancy: 0.2832

The information below is about IL_8P9A_435

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|C|1279
6D90|1|2|G|1280
6D90|1|2|G|1281
6D90|1|2|A|1282
6D90|1|2|C|1283
6D90|1|2|A|1284
6D90|1|2|G|1285
6D90|1|2|G|1286
6D90|1|2|A|1287
6D90|1|2|U|1288
6D90|1|2|U|1289
6D90|1|2|G|1290
*
6D90|1|2|C|1309
6D90|1|2|U|1310
6D90|1|2|C|1311
6D90|1|2|G|1312
6D90|1|2|A|1313
6D90|1|2|U|1314
6D90|1|2|U|1315
6D90|1|2|C|1316
6D90|1|2|C|1317
6D90|1|2|G|1318

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LL

eS10

Chain NN

eS12

Chain ee

eS29

Chain gg

eS31