IL_6D90_285

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCUCAGCGUG*CCGUUGAACCCC

Length

23 nucleotides

Bulged bases

6D90|1|2|U|1585, 6D90|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|G|1540
6D90|1|2|G|1541
6D90|1|2|C|1542
6D90|1|2|U|1543
6D90|1|2|C|1544
6D90|1|2|A|1545
6D90|1|2|G|1546
6D90|1|2|C|1547
6D90|1|2|G|1548
6D90|1|2|U|1549
6D90|1|2|G|1550
*
6D90|1|2|C|1582
6D90|1|2|C|1583
6D90|1|2|G|1584
6D90|1|2|U|1585
6D90|1|2|U|1586
6D90|1|2|G|1587
6D90|1|2|A|1588
6D90|1|2|A|1589
6D90|1|2|C|1590
6D90|1|2|C|1591
6D90|1|2|C|1592
6D90|1|2|C|1593

Current chains

Chain 2

18S rRNA

Nearby chains

Chain EE

uS3

Chain GG

uS7

Chain RR

uS9

Chain UU

eS19

Chain VV

uS10

Chain aa

eS25

Chain ee

eS29